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Osmium in PDB 6d9w: Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State

Protein crystallography data

The structure of Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State, PDB code: 6d9w was solved by R.Gaudet, L.B.Bane, W.A.Weihofen, A.Singharoy, C.M.Zimanyi, A.T.Bozzi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.47 / 3.94
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 113.131, 132.077, 220.995, 90.00, 90.00, 90.00
R / Rfree (%) 27.1 / 30.9

Osmium Binding Sites:

The binding sites of Osmium atom in the Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State (pdb code 6d9w). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 3 binding sites of Osmium where determined in the Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State, PDB code: 6d9w:
Jump to Osmium binding site number: 1; 2; 3;

Osmium binding site 1 out of 3 in 6d9w

Go back to Osmium Binding Sites List in 6d9w
Osmium binding site 1 out of 3 in the Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State within 5.0Å range:

Osmium binding site 2 out of 3 in 6d9w

Go back to Osmium Binding Sites List in 6d9w
Osmium binding site 2 out of 3 in the Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os502

b:0.9
occ:1.00
O A:LEU394 4.9 0.4 1.0

Osmium binding site 3 out of 3 in 6d9w

Go back to Osmium Binding Sites List in 6d9w
Osmium binding site 3 out of 3 in the Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 3 of Crystal Structure of Deinococcus Radiodurans Mnth, An Nramp-Family Transition Metal Transporter, in the Inward-Open Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Os301

b:0.9
occ:1.00
NH1 H:ARG38 3.2 61.3 1.0
CZ H:ARG38 4.3 60.8 1.0
NH2 H:ARG38 4.5 89.7 1.0

Reference:

A.T.Bozzi, C.M.Zimanyi, J.M.Nicoludis, B.K.Lee, C.H.Zhang, R.Gaudet. Structures in Multiple Conformations Reveal Distinct Transition Metal and Proton Pathways in An Nramp Transporter. Elife V. 8 2019.
ISSN: ESSN 2050-084X
PubMed: 30714568
DOI: 10.7554/ELIFE.41124
Page generated: Wed Dec 16 02:01:42 2020

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