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Osmium in PDB 5hb4: Crystal Structure of Chaetomium Thermophilum NUP192

Protein crystallography data

The structure of Crystal Structure of Chaetomium Thermophilum NUP192, PDB code: 5hb4 was solved by T.Stuwe, D.H.Lin, A.Hoelz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.74 / 3.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 190.740, 53.500, 171.790, 90.00, 108.33, 90.00
R / Rfree (%) 23.3 / 26.5

Osmium Binding Sites:

The binding sites of Osmium atom in the Crystal Structure of Chaetomium Thermophilum NUP192 (pdb code 5hb4). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 5 binding sites of Osmium where determined in the Crystal Structure of Chaetomium Thermophilum NUP192, PDB code: 5hb4:
Jump to Osmium binding site number: 1; 2; 3; 4; 5;

Osmium binding site 1 out of 5 in 5hb4

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Osmium binding site 1 out of 5 in the Crystal Structure of Chaetomium Thermophilum NUP192


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Crystal Structure of Chaetomium Thermophilum NUP192 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os1801

b:0.2
occ:1.00
H B:ASN812 4.1 0.5 1.0
HB2 B:SER811 4.2 0.1 1.0
HD21 B:ASN812 4.2 0.6 1.0
HA B:SER811 4.3 0.2 1.0
ND2 B:ASN812 4.3 0.6 1.0
HA3 B:GLY1243 4.3 0.2 1.0
CG B:ASN812 4.5 0.4 1.0
HB3 B:SER811 4.5 0.1 1.0
HD22 B:ASN812 4.6 0.6 1.0
OD1 B:ASN812 4.6 0.2 1.0
CB B:SER811 4.7 1.0 1.0
N B:ASN812 4.8 0.6 1.0
HB3 B:ASN812 4.9 0.2 1.0
CA B:SER811 4.9 0.0 1.0

Osmium binding site 2 out of 5 in 5hb4

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Osmium binding site 2 out of 5 in the Crystal Structure of Chaetomium Thermophilum NUP192


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of Crystal Structure of Chaetomium Thermophilum NUP192 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os1802

b:0.7
occ:0.94
HZ2 B:LYS910 3.2 0.8 1.0
HZ1 B:LYS910 3.5 0.8 1.0
HE3 B:LYS910 3.5 0.7 1.0
NZ B:LYS910 3.7 0.7 1.0
HZ2 B:LYS844 3.9 0.0 1.0
CE B:LYS910 4.1 0.7 1.0
HD21 B:ASN771 4.3 0.8 1.0
HE3 B:LYS844 4.3 0.4 1.0
HZ3 B:LYS910 4.5 0.8 1.0
HD2 B:LYS844 4.5 0.5 1.0
NZ B:LYS844 4.6 0.2 1.0
HD21 B:ASN842 4.6 0.1 1.0
HD3 B:LYS910 4.6 0.8 1.0
HZ1 B:LYS844 4.7 0.0 1.0
HG12 B:VAL912 4.8 0.4 1.0
HH2 B:TRP839 4.9 0.8 1.0
HE2 B:LYS910 4.9 0.7 1.0
CE B:LYS844 4.9 0.5 1.0
CD B:LYS910 5.0 0.7 1.0

Osmium binding site 3 out of 5 in 5hb4

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Osmium binding site 3 out of 5 in the Crystal Structure of Chaetomium Thermophilum NUP192


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 3 of Crystal Structure of Chaetomium Thermophilum NUP192 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os1803

b:0.9
occ:0.75
HD13 B:ILE1258 2.7 0.3 1.0
HD11 B:ILE1258 3.3 0.3 1.0
CD1 B:ILE1258 3.4 0.1 1.0
HG12 B:ILE1258 3.6 0.4 1.0
HG21 B:ILE1258 3.7 0.8 1.0
HG23 B:ILE1258 4.0 0.8 1.0
CG1 B:ILE1258 4.1 0.1 1.0
HE B:ARG1302 4.2 0.4 1.0
HD12 B:ILE1258 4.2 0.3 1.0
CG2 B:ILE1258 4.3 1.0 1.0
HG22 B:THR1298 4.5 0.2 1.0
OD1 B:ASN1301 4.5 0.9 1.0
HD21 B:ASN1301 4.6 0.8 1.0
HH21 B:ARG1302 4.7 0.9 1.0
HG3 B:ARG1302 4.7 0.7 1.0
ND2 B:ASN1301 4.8 0.3 1.0
HG13 B:ILE1258 4.8 0.4 1.0
CG B:ASN1301 4.8 0.1 1.0
CB B:ILE1258 4.9 0.4 1.0
HG2 B:ARG1302 5.0 0.7 1.0
NE B:ARG1302 5.0 0.7 1.0

Osmium binding site 4 out of 5 in 5hb4

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Osmium binding site 4 out of 5 in the Crystal Structure of Chaetomium Thermophilum NUP192


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 4 of Crystal Structure of Chaetomium Thermophilum NUP192 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os1804

b:0.2
occ:0.45
HG B:CYS1178 1.7 0.6 1.0
SG B:CYS1178 2.9 0.7 1.0
HB3 B:CYS1178 3.7 0.8 1.0
CB B:CYS1178 3.8 0.0 1.0
HB2 B:CYS1178 3.9 0.8 1.0
HG22 B:VAL1323 4.5 0.9 1.0
HG21 B:VAL1323 4.8 0.9 1.0
HG13 B:VAL1323 4.9 0.2 1.0

Osmium binding site 5 out of 5 in 5hb4

Go back to Osmium Binding Sites List in 5hb4
Osmium binding site 5 out of 5 in the Crystal Structure of Chaetomium Thermophilum NUP192


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 5 of Crystal Structure of Chaetomium Thermophilum NUP192 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os1805

b:0.2
occ:0.38
HB2 B:CYS1148 2.2 0.9 1.0
CB B:CYS1148 2.9 0.9 1.0
H B:CYS1148 3.0 0.8 1.0
HG B:CYS1148 3.0 0.2 1.0
SG B:CYS1148 3.1 0.7 1.0
HB3 B:CYS1148 3.6 0.9 1.0
N B:CYS1148 3.7 0.2 1.0
CA B:CYS1148 3.9 0.0 1.0
H B:GLU1149 4.2 0.4 1.0
HA B:CYS1148 4.6 0.2 1.0
N B:GLU1149 4.8 0.2 1.0
C B:CYS1148 4.8 0.9 1.0
C B:GLY1147 4.9 0.4 1.0
HA3 B:GLY1147 5.0 0.6 1.0

Reference:

D.H.Lin, T.Stuwe, S.Schilbach, E.J.Rundlet, T.Perriches, G.Mobbs, Y.Fan, K.Thierbach, F.M.Huber, L.N.Collins, A.M.Davenport, Y.E.Jeon, A.Hoelz. Architecture of the Symmetric Core of the Nuclear Pore. Science V. 352 F1015 2016.
ISSN: ESSN 1095-9203
PubMed: 27081075
DOI: 10.1126/SCIENCE.AAF1015
Page generated: Wed Dec 16 02:01:28 2020

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