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Osmium in PDB 5cws: Crystal Structure of the Intact Chaetomium Thermophilum NSP1-NUP49- NUP57 Channel Nucleoporin Heterotrimer Bound to Its NIC96 Nuclear Pore Complex Attachment Site

Protein crystallography data

The structure of Crystal Structure of the Intact Chaetomium Thermophilum NSP1-NUP49- NUP57 Channel Nucleoporin Heterotrimer Bound to Its NIC96 Nuclear Pore Complex Attachment Site, PDB code: 5cws was solved by C.J.Bley, S.Petrovic, M.Paduch, V.Lu, A.A.Kossiakoff, A.Hoelz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.67 / 3.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 123.180, 162.820, 212.870, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 26.5

Osmium Binding Sites:

The binding sites of Osmium atom in the Crystal Structure of the Intact Chaetomium Thermophilum NSP1-NUP49- NUP57 Channel Nucleoporin Heterotrimer Bound to Its NIC96 Nuclear Pore Complex Attachment Site (pdb code 5cws). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 2 binding sites of Osmium where determined in the Crystal Structure of the Intact Chaetomium Thermophilum NSP1-NUP49- NUP57 Channel Nucleoporin Heterotrimer Bound to Its NIC96 Nuclear Pore Complex Attachment Site, PDB code: 5cws:
Jump to Osmium binding site number: 1; 2;

Osmium binding site 1 out of 2 in 5cws

Go back to Osmium Binding Sites List in 5cws
Osmium binding site 1 out of 2 in the Crystal Structure of the Intact Chaetomium Thermophilum NSP1-NUP49- NUP57 Channel Nucleoporin Heterotrimer Bound to Its NIC96 Nuclear Pore Complex Attachment Site


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Crystal Structure of the Intact Chaetomium Thermophilum NSP1-NUP49- NUP57 Channel Nucleoporin Heterotrimer Bound to Its NIC96 Nuclear Pore Complex Attachment Site within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Os701

b:0.9
occ:1.00
HG21 C:THR617 2.1 0.9 1.0
HG23 C:THR617 2.9 0.9 1.0
CG2 C:THR617 2.9 0.4 1.0
O C:PRO612 3.0 0.1 1.0
HH22 C:ARG621 3.2 0.1 1.0
NH2 C:ARG621 3.3 0.9 1.0
HH12 C:ARG621 3.3 0.2 1.0
CZ C:ARG621 3.4 0.8 1.0
NH1 C:ARG621 3.4 0.3 1.0
HG22 C:THR617 3.5 0.9 1.0
HG1 C:THR617 3.5 0.1 1.0
HH21 C:ARG621 3.7 0.1 1.0
HH11 C:ARG621 3.9 0.2 1.0
OG1 C:THR617 4.0 0.8 1.0
CB C:THR617 4.0 0.8 1.0
C C:PRO612 4.1 0.7 1.0
NE C:ARG621 4.2 1.0 1.0
HB C:THR617 4.4 0.9 1.0
HA C:PRO612 4.5 0.1 1.0
HE C:ARG621 4.6 0.8 1.0
HA C:ASP613 4.6 0.6 1.0
HD2 C:ARG621 4.6 0.9 1.0
OD2 C:ASP614 4.8 0.2 1.0
CA C:PRO612 4.8 0.5 1.0
HB3 C:PRO612 4.8 0.6 1.0

Osmium binding site 2 out of 2 in 5cws

Go back to Osmium Binding Sites List in 5cws
Osmium binding site 2 out of 2 in the Crystal Structure of the Intact Chaetomium Thermophilum NSP1-NUP49- NUP57 Channel Nucleoporin Heterotrimer Bound to Its NIC96 Nuclear Pore Complex Attachment Site


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of Crystal Structure of the Intact Chaetomium Thermophilum NSP1-NUP49- NUP57 Channel Nucleoporin Heterotrimer Bound to Its NIC96 Nuclear Pore Complex Attachment Site within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Os701

b:1.0
occ:1.00
O I:PRO612 2.2 0.2 1.0
HA I:PRO612 2.4 0.8 1.0
HH22 I:ARG621 2.7 0.4 1.0
C I:PRO612 2.8 0.9 1.0
CA I:PRO612 2.9 0.4 1.0
HB2 I:PRO612 2.9 0.7 1.0
NH2 I:ARG621 2.9 0.3 1.0
HH12 I:ARG621 3.1 0.4 1.0
CZ I:ARG621 3.2 0.2 1.0
CB I:PRO612 3.2 0.1 1.0
NH1 I:ARG621 3.3 0.7 1.0
HH21 I:ARG621 3.3 0.4 1.0
HB3 I:PRO612 3.4 0.7 1.0
HH11 I:ARG621 3.8 0.4 1.0
OG1 I:THR617 3.9 0.1 1.0
NE I:ARG621 4.0 0.8 1.0
N I:ASP613 4.1 0.1 1.0
HB I:THR617 4.2 0.3 1.0
N I:PRO612 4.3 0.1 1.0
HE I:ARG621 4.3 0.8 1.0
O I:LYS611 4.5 0.4 1.0
HA I:ASP613 4.5 0.9 1.0
HG1 I:THR617 4.5 0.7 1.0
CB I:THR617 4.6 0.1 1.0
HD2 I:ARG621 4.6 0.2 1.0
CG I:PRO612 4.7 0.7 1.0
H I:ASP613 4.8 0.6 1.0
HG21 I:THR617 4.8 0.6 1.0
HG2 I:PRO612 4.9 0.2 1.0
C I:LYS611 4.9 0.1 1.0
CA I:ASP613 4.9 0.6 1.0
CD I:ARG621 5.0 0.2 1.0

Reference:

T.Stuwe, C.J.Bley, K.Thierbach, S.Petrovic, S.Schilbach, D.J.Mayo, T.Perriches, E.J.Rundlet, Y.E.Jeon, L.N.Collins, F.M.Huber, D.H.Lin, M.Paduch, A.Koide, V.Lu, J.Fischer, E.Hurt, S.Koide, A.A.Kossiakoff, A.Hoelz. Architecture of the Fungal Nuclear Pore Inner Ring Complex. Science V. 350 56 2015.
ISSN: ESSN 1095-9203
PubMed: 26316600
DOI: 10.1126/SCIENCE.AAC9176
Page generated: Wed Dec 16 02:01:29 2020

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