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Osmium in PDB 3nyj: Crystal Structure Analysis of App E2 Domain

Protein crystallography data

The structure of Crystal Structure Analysis of App E2 Domain, PDB code: 3nyj was solved by Y.Ha, J.Hu, S.Lee, X.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 3.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 114.979, 40.149, 58.376, 90.00, 90.00, 90.00
R / Rfree (%) 29.7 / 38

Osmium Binding Sites:

The binding sites of Osmium atom in the Crystal Structure Analysis of App E2 Domain (pdb code 3nyj). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total only one binding site of Osmium was determined in the Crystal Structure Analysis of App E2 Domain, PDB code: 3nyj:

Osmium binding site 1 out of 1 in 3nyj

Go back to Osmium Binding Sites List in 3nyj
Osmium binding site 1 out of 1 in the Crystal Structure Analysis of App E2 Domain


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Crystal Structure Analysis of App E2 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1

b:64.1
occ:0.10
O A:HOH9 2.5 39.5 1.0
O A:HOH4 2.6 1.0 1.0
O A:HOH27 2.6 75.7 1.0
CA A:HIS492 4.3 63.1 1.0
CB A:HIS492 4.4 53.8 1.0
N A:HIS492 4.7 53.9 1.0
NE2 A:HIS488 4.7 0.2 1.0
CG A:HIS492 4.8 86.2 1.0
CD2 A:HIS492 4.9 0.2 1.0
CD2 A:HIS488 5.0 55.7 1.0

Reference:

S.Lee, Y.Xue, J.Hu, Y.Wang, X.Liu, B.Demeler, Y.Ha. The E2 Domains of App and APLP1 Share A Conserved Mode of Dimerization. Biochemistry V. 50 5453 2011.
ISSN: ISSN 0006-2960
PubMed: 21574595
DOI: 10.1021/BI101846X
Page generated: Wed Dec 16 02:01:24 2020

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