Atomistry » Osmium » PDB 1hc8-6pla » 3n44
Atomistry »
  Osmium »
    PDB 1hc8-6pla »
      3n44 »

Osmium in PDB 3n44: Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus.

Protein crystallography data

The structure of Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus., PDB code: 3n44 was solved by J.Voss, M.C.Vaney, S.Duquerroy, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.30 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.089, 89.954, 174.018, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 25

Osmium Binding Sites:

The binding sites of Osmium atom in the Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus. (pdb code 3n44). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 6 binding sites of Osmium where determined in the Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus., PDB code: 3n44:
Jump to Osmium binding site number: 1; 2; 3; 4; 5; 6;

Osmium binding site 1 out of 6 in 3n44

Go back to Osmium Binding Sites List in 3n44
Osmium binding site 1 out of 6 in the Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os361

b:81.9
occ:0.31
NE2 B:HIS18 2.2 46.6 1.0
CE1 B:HIS18 2.9 47.3 1.0
CD2 B:HIS18 3.4 45.4 1.0
CB B:PRO20 3.7 46.2 1.0
NE2 F:HIS230 4.1 38.0 1.0
CD2 F:HIS230 4.1 37.9 1.0
CA B:PRO20 4.1 44.7 1.0
ND1 B:HIS18 4.1 47.1 1.0
CG B:HIS18 4.3 43.9 1.0
N B:PRO20 4.4 43.0 1.0
CG B:PRO20 4.5 49.0 1.0
CE1 F:HIS230 4.6 37.4 1.0
CD B:PRO20 4.6 43.3 1.0
CG F:HIS230 4.6 35.8 1.0
CG2 F:THR228 4.7 38.0 1.0
ND1 F:HIS230 4.9 37.6 1.0

Osmium binding site 2 out of 6 in 3n44

Go back to Osmium Binding Sites List in 3n44
Osmium binding site 2 out of 6 in the Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os362

b:0.7
occ:0.41
NE2 B:HIS142 2.6 73.1 1.0
CE1 B:HIS142 3.4 74.0 1.0
CD2 B:HIS142 3.5 71.6 1.0
ND1 B:HIS142 4.5 73.8 1.0
CG B:HIS142 4.6 70.2 1.0
O B:LYS140 4.6 62.2 1.0
CD B:PRO292 4.6 67.9 1.0
CG B:PRO292 4.8 71.4 1.0

Osmium binding site 3 out of 6 in 3n44

Go back to Osmium Binding Sites List in 3n44
Osmium binding site 3 out of 6 in the Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 3 of Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os363

b:0.7
occ:0.46
NE2 B:HIS130 2.8 60.2 1.0
O B:HOH426 3.4 59.2 1.0
CD2 B:HIS130 3.4 58.9 1.0
CE1 B:HIS130 3.9 61.3 1.0
CE F:LYS245 4.0 80.3 1.0
CD F:LYS245 4.2 68.8 1.0
CG B:HIS130 4.6 57.6 1.0
NZ F:LYS245 4.7 90.5 1.0
ND1 B:HIS130 4.8 61.4 1.0
CB B:ASP132 5.0 56.4 1.0

Osmium binding site 4 out of 6 in 3n44

Go back to Osmium Binding Sites List in 3n44
Osmium binding site 4 out of 6 in the Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 4 of Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os364

b:89.8
occ:0.29
N B:VAL8 3.8 54.4 1.0
CG1 B:VAL8 4.0 56.7 1.0
O B:PHE6 4.0 64.9 1.0
CE1 B:HIS62 4.1 56.7 1.0
NE2 B:HIS62 4.1 58.5 1.0
CD2 B:TYR9 4.2 54.5 1.0
CA B:ASN7 4.2 57.7 1.0
CE2 B:TYR9 4.3 55.8 1.0
OD1 B:ASN7 4.4 71.9 1.0
O B:HOH374 4.4 49.1 1.0
CB B:VAL8 4.4 56.8 1.0
CE2 B:PHE6 4.5 69.1 1.0
C B:ASN7 4.5 59.1 1.0
CD2 B:PHE6 4.6 67.0 1.0
CA B:VAL8 4.6 52.8 1.0
C B:PHE6 4.8 64.5 1.0
N B:ASN7 4.9 59.0 1.0

Osmium binding site 5 out of 6 in 3n44

Go back to Osmium Binding Sites List in 3n44
Osmium binding site 5 out of 6 in the Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 5 of Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Os454

b:0.9
occ:0.46
CG F:ARG366 4.1 62.8 1.0
CD F:ARG366 4.1 73.2 1.0
CD2 F:HIS375 4.2 68.9 1.0
NE2 F:HIS375 4.3 69.6 1.0
O F:GLU364 4.5 60.1 1.0
C F:GLU364 5.0 59.2 1.0

Osmium binding site 6 out of 6 in 3n44

Go back to Osmium Binding Sites List in 3n44
Osmium binding site 6 out of 6 in the Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 6 of Crystal Structure of the Mature Envelope Glycoprotein Complex (Trypsin Cleavage; Osmium Soak) of Chikungunya Virus. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Os455

b:70.0
occ:0.24
CE2 F:TYR147 3.8 46.8 1.0
CZ F:TYR147 3.9 54.5 1.0
CD2 F:TYR147 4.1 45.2 1.0
CG2 F:THR145 4.2 43.9 1.0
CE1 F:TYR147 4.3 47.2 1.0
OH F:TYR147 4.3 56.5 1.0
CB F:SER130 4.4 39.2 1.0
C F:ALA146 4.4 42.6 1.0
CG F:TYR147 4.5 43.8 1.0
N F:TYR147 4.5 39.6 1.0
CA F:ALA146 4.6 38.8 1.0
CD1 F:TYR147 4.6 45.8 1.0
N F:ALA146 4.6 38.7 1.0
C F:THR145 4.8 42.6 1.0
O F:ALA146 4.8 41.8 1.0
O F:THR145 4.8 42.8 1.0
OG F:SER130 5.0 48.3 1.0

Reference:

J.E.Voss, M.C.Vaney, S.Duquerroy, C.Vonrhein, C.Girard-Blanc, E.Crublet, A.Thompson, G.Bricogne, F.A.Rey. Glycoprotein Organization of Chikungunya Virus Particles Revealed By X-Ray Crystallography. Nature V. 468 709 2010.
ISSN: ISSN 0028-0836
PubMed: 21124458
DOI: 10.1038/NATURE09555
Page generated: Wed Dec 16 02:01:27 2020

Last articles

Zn in 7NN0
Zn in 7NIO
Zn in 7LUP
Zn in 7M1Y
Zn in 7LO4
Zn in 7KWO
Zn in 7KJY
Zn in 7KCQ
Zn in 7KC2
Zn in 7KCB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy