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Osmium in PDB 3dhs: Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna

Enzymatic activity of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna

All present enzymatic activity of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna:
3.1.26.5;

Protein crystallography data

The structure of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna, PDB code: 3dhs was solved by N.R.Pace, A.V.Kazantsev, A.A.Krivenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.07 / 3.60
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 147.350, 160.010, 133.450, 90.00, 90.00, 90.00
R / Rfree (%) 29 / 31.4

Osmium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Osmium atom in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna (pdb code 3dhs). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 15 binding sites of Osmium where determined in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna, PDB code: 3dhs:
Jump to Osmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Osmium binding site 1 out of 15 in 3dhs

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Osmium binding site 1 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os501

b:18.0
occ:1.00
 OP2 A:A49 3.5 0.8 1.0
OP1 A:A49 3.6 0.8 1.0
P A:A49 4.0 0.8 1.0
O5' A:A49 4.6 0.8 1.0
C5' A:A49 4.8 0.9 1.0
O6 A:G394 4.8 0.5 1.0
N7 A:G394 4.9 0.5 1.0

Osmium binding site 2 out of 15 in 3dhs

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Osmium binding site 2 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os502

b:40.4
occ:1.00
 O4 A:U24 3.8 0.2 1.0
O4 A:U42 3.8 47.4 1.0
O6 A:G41 4.5 68.2 1.0
C4 A:U24 4.7 0.2 1.0
C5 A:U24 5.0 0.2 1.0
C4 A:U42 5.0 47.4 1.0

Osmium binding site 3 out of 15 in 3dhs

Go back to Osmium Binding Sites List in 3dhs
Osmium binding site 3 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 3 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os503

b:58.8
occ:1.00
 O6 A:G44 4.0 94.8 1.0
N7 A:G44 4.3 94.8 1.0
C6 A:G44 4.8 94.8 1.0
C5 A:G44 5.0 94.8 1.0

Osmium binding site 4 out of 15 in 3dhs

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Osmium binding site 4 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 4 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os504

b:70.3
occ:1.00
 O6 A:G382 3.8 0.5 1.0
OP2 A:A381 4.2 0.0 1.0
O6 A:G383 4.4 0.8 1.0
N7 A:G382 4.5 0.5 1.0
C6 A:G382 4.7 0.5 1.0
C5 A:G382 4.9 0.5 1.0
N7 A:G383 5.0 0.8 1.0

Osmium binding site 5 out of 15 in 3dhs

Go back to Osmium Binding Sites List in 3dhs
Osmium binding site 5 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 5 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os505

b:52.6
occ:1.00
 O6 A:G273 4.0 0.9 1.0
N7 A:G273 4.1 0.9 1.0
O6 A:G275 4.6 0.9 1.0
O6 A:G274 4.6 0.3 1.0
C6 A:G273 4.6 0.9 1.0
C5 A:G273 4.7 0.9 1.0
OP2 A:G272 4.8 0.9 1.0
N7 A:G274 4.9 0.3 1.0

Osmium binding site 6 out of 15 in 3dhs

Go back to Osmium Binding Sites List in 3dhs
Osmium binding site 6 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 6 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os506

b:85.2
occ:1.00
 O6 A:G307 4.5 0.9 1.0
N7 A:G306 4.9 0.9 1.0

Osmium binding site 7 out of 15 in 3dhs

Go back to Osmium Binding Sites List in 3dhs
Osmium binding site 7 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 7 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os507

b:0.7
occ:1.00
 N2 A:G335 3.0 0.1 1.0
N1 A:G335 3.4 0.1 1.0
C2 A:G335 3.6 0.1 1.0
C6 A:G335 4.5 0.1 1.0
OP2 A:A334 4.7 0.4 1.0
N3 A:G335 4.8 0.1 1.0
O6 A:G335 4.8 0.1 1.0

Osmium binding site 8 out of 15 in 3dhs

Go back to Osmium Binding Sites List in 3dhs
Osmium binding site 8 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 8 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os508

b:0.6
occ:1.00
 O6 A:G314 2.5 0.4 1.0
C6 A:G314 3.6 0.4 1.0
C5 A:G314 4.4 0.4 1.0
N7 A:G314 4.4 0.4 1.0
N1 A:G314 4.7 0.4 1.0
OP2 A:C313 4.8 0.2 1.0
OP2 A:G321 4.9 0.6 1.0

Osmium binding site 9 out of 15 in 3dhs

Go back to Osmium Binding Sites List in 3dhs
Osmium binding site 9 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 9 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os509

b:72.6
occ:1.00
 O6 A:G28 4.3 0.6 1.0
O6 A:G38 4.5 0.4 1.0
O6 A:G27 4.8 0.3 1.0
N7 A:G37 4.9 0.7 1.0
O6 A:G37 5.0 0.7 1.0

Osmium binding site 10 out of 15 in 3dhs

Go back to Osmium Binding Sites List in 3dhs
Osmium binding site 10 out of 15 in the Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 10 of Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os510

b:0.2
occ:1.00
 O6 A:G349 3.4 0.3 1.0
C6 A:G349 4.5 0.3 1.0
OP2 A:G379 4.8 0.7 1.0
N1 A:G349 5.0 0.3 1.0

Reference:

A.V.Kazantsev, A.A.Krivenko, N.R.Pace. Mapping Metal-Binding Sites in the Catalytic Domain of Bacterial Rnase P Rna Rna V. 15 266 2009.
ISSN: ISSN 1355-8382
PubMed: 19095619
DOI: 10.1261/RNA.1331809
Page generated: Thu Oct 10 09:53:47 2024

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