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Osmium in PDB 2a2e: Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.

Protein crystallography data

The structure of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type., PDB code: 2a2e was solved by A.Torres-Larios, K.K.Swinger, A.S.Krasilnikov, T.Pan, A.Mondragon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 3.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 179.277, 85.231, 101.912, 90.00, 96.83, 90.00
R / Rfree (%) 34.4 / 36.2

Osmium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Osmium atom in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. (pdb code 2a2e). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 17 binding sites of Osmium where determined in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type., PDB code: 2a2e:
Jump to Osmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Osmium binding site 1 out of 17 in 2a2e

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Osmium binding site 1 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1001

b:82.4
occ:1.00
N7 A:G7 4.0 0.8 1.0
O6 A:G7 4.3 0.8 1.0
C5 A:G7 4.8 0.8 1.0
C6 A:G7 4.9 0.8 1.0
C8 A:G7 5.0 0.8 1.0
O6 A:G6 5.0 80.2 1.0

Osmium binding site 2 out of 17 in 2a2e

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Osmium binding site 2 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1002

b:82.4
occ:1.00
O6 A:G154 3.9 84.2 1.0
OP2 A:G163 4.0 0.6 1.0
O6 A:G155 4.1 87.7 1.0
N7 A:G154 4.4 84.2 1.0
C6 A:G154 4.6 84.2 1.0
C5 A:G154 4.8 84.2 1.0

Osmium binding site 3 out of 17 in 2a2e

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Osmium binding site 3 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 3 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1003

b:82.4
occ:1.00
OP2 A:C125 2.7 55.2 1.0
OP2 A:C126 4.0 40.0 1.0
P A:C125 4.1 78.7 1.0
O3' A:A124 4.7 62.3 1.0
N7 A:G127 4.8 69.3 1.0
C5' A:C125 4.9 78.7 1.0
O5' A:C125 4.9 78.7 1.0

Osmium binding site 4 out of 17 in 2a2e

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Osmium binding site 4 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 4 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1004

b:82.4
occ:1.00
N4 A:C260 4.3 0.1 1.0

Osmium binding site 5 out of 17 in 2a2e

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Osmium binding site 5 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 5 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:

Osmium binding site 6 out of 17 in 2a2e

Go back to Osmium Binding Sites List in 2a2e
Osmium binding site 6 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 6 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1006

b:82.4
occ:1.00
O6 A:G87 3.4 53.8 1.0
O6 A:G86 3.7 66.0 1.0
N7 A:G87 4.3 53.8 1.0
C6 A:G87 4.4 53.8 1.0
C6 A:G86 4.5 66.0 1.0
N7 A:G86 4.5 66.0 1.0
C5 A:G87 4.7 53.8 1.0
C5 A:G86 4.8 66.0 1.0

Osmium binding site 7 out of 17 in 2a2e

Go back to Osmium Binding Sites List in 2a2e
Osmium binding site 7 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 7 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1007

b:82.4
occ:1.00
N1 A:G179 3.8 95.8 1.0
O6 A:G179 3.9 95.8 1.0
O6 A:G178 4.2 91.4 1.0
C6 A:G179 4.3 95.8 1.0
C2 A:G179 4.8 95.8 1.0
N2 A:G179 4.8 95.8 1.0

Osmium binding site 8 out of 17 in 2a2e

Go back to Osmium Binding Sites List in 2a2e
Osmium binding site 8 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 8 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1008

b:82.4
occ:1.00
OP1 A:C317 4.2 42.1 1.0
P A:G266 4.9 82.4 1.0

Osmium binding site 9 out of 17 in 2a2e

Go back to Osmium Binding Sites List in 2a2e
Osmium binding site 9 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 9 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1009

b:82.4
occ:1.00
N4 A:C54 4.9 40.0 1.0

Osmium binding site 10 out of 17 in 2a2e

Go back to Osmium Binding Sites List in 2a2e
Osmium binding site 10 out of 17 in the Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type.


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 10 of Crystal Structure of the Rna Subunit of Ribonuclease P. Bacterial A- Type. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os1010

b:82.4
occ:1.00
N3 A:A57 3.9 47.0 1.0
C2 A:A57 4.0 47.0 1.0
O2 A:C316 4.8 40.0 1.0

Reference:

A.Torres-Larios, K.K.Swinger, A.S.Krasilnikov, T.Pan, A.Mondragon. Crystal Structure of the Rna Component of Bacterial Ribonuclease P. Nature V. 437 584 2005.
ISSN: ISSN 0028-0836
PubMed: 16113684
DOI: 10.1038/NATURE04074
Page generated: Wed Dec 16 02:01:17 2020

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