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Osmium in PDB 1sz0: N-Terminal 3 Domains of Ci-Mpr Bound to Mannose 6-Phosphate

Protein crystallography data

The structure of N-Terminal 3 Domains of Ci-Mpr Bound to Mannose 6-Phosphate, PDB code: 1sz0 was solved by L.J.Olson, N.M.Dahms, J.-J.P.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.80 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.100, 86.500, 84.800, 90.00, 109.57, 90.00
R / Rfree (%) 23.8 / 28.7

Osmium Binding Sites:

The binding sites of Osmium atom in the N-Terminal 3 Domains of Ci-Mpr Bound to Mannose 6-Phosphate (pdb code 1sz0). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 2 binding sites of Osmium where determined in the N-Terminal 3 Domains of Ci-Mpr Bound to Mannose 6-Phosphate, PDB code: 1sz0:
Jump to Osmium binding site number: 1; 2;

Osmium binding site 1 out of 2 in 1sz0

Go back to Osmium Binding Sites List in 1sz0
Osmium binding site 1 out of 2 in the N-Terminal 3 Domains of Ci-Mpr Bound to Mannose 6-Phosphate


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of N-Terminal 3 Domains of Ci-Mpr Bound to Mannose 6-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os6001

b:61.1
occ:0.50
NH2 A:ARG200 2.5 66.5 1.0
NH1 A:ARG200 2.6 66.1 1.0
CZ A:ARG200 2.9 67.1 1.0
O A:LYS265 3.9 62.0 1.0
CG A:LYS265 4.1 65.4 1.0
NE A:ARG200 4.2 66.7 1.0
N A:CYS268 4.4 61.5 1.0
CD A:LYS265 4.5 67.0 1.0
CE A:LYS265 4.8 67.3 1.0

Osmium binding site 2 out of 2 in 1sz0

Go back to Osmium Binding Sites List in 1sz0
Osmium binding site 2 out of 2 in the N-Terminal 3 Domains of Ci-Mpr Bound to Mannose 6-Phosphate


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of N-Terminal 3 Domains of Ci-Mpr Bound to Mannose 6-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os6002

b:77.4
occ:0.20
NH2 B:ARG1200 3.2 72.6 1.0
CD1 B:PHE1236 3.3 90.3 1.0
CE1 B:PHE1236 3.6 90.5 1.0
CG B:PHE1236 3.8 90.3 1.0
CZ B:PHE1270 4.1 57.2 1.0
CD2 B:LEU1198 4.1 50.5 1.0
CZ B:PHE1236 4.3 90.5 1.0
CB B:PHE1236 4.4 90.2 1.0
CD2 B:PHE1236 4.5 90.7 1.0
CZ B:ARG1200 4.5 73.0 1.0
CE2 B:PHE1270 4.6 56.7 1.0
CE2 B:PHE1236 4.7 90.3 1.0
N B:CYS1268 4.9 73.8 1.0

Reference:

L.J.Olson, N.M.Dahms, J.-J.P.Kim. The N-Terminal Carbohydrate Recognition Site of the Cation-Independent Mannose 6-Phosphate Receptor J.Biol.Chem. V. 279 34000 2004.
ISSN: ISSN 0021-9258
PubMed: 15169779
DOI: 10.1074/JBC.M404588200
Page generated: Wed Dec 16 02:01:17 2020

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