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Osmium in PDB 1qa6: Crystal Structure of A Conserved Ribosomal Protein-Rna Complex

Protein crystallography data

The structure of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex, PDB code: 1qa6 was solved by G.L.Conn, D.E.Draper, E.E.Lattman, A.G.Gittis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 150.675, 150.675, 63.841, 90.00, 90.00, 90.00
R / Rfree (%) 24 / 32.1

Other elements in 1qa6:

The structure of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Osmium Binding Sites:

The binding sites of Osmium atom in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex (pdb code 1qa6). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 4 binding sites of Osmium where determined in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex, PDB code: 1qa6:
Jump to Osmium binding site number: 1; 2; 3; 4;

Osmium binding site 1 out of 4 in 1qa6

Go back to Osmium Binding Sites List in 1qa6
Osmium binding site 1 out of 4 in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Os203

b:39.0
occ:1.00
OP1 C:G137 3.6 28.9 1.0
O4 C:U131 3.8 40.4 1.0
OP2 C:A136 4.3 22.0 1.0
O4 C:U132 4.5 29.3 1.0
O4 C:U133 4.6 31.0 1.0
C4 C:U131 4.7 40.4 1.0
C5 C:U131 4.8 40.4 1.0
O5' C:A136 4.9 22.0 1.0

Osmium binding site 2 out of 4 in 1qa6

Go back to Osmium Binding Sites List in 1qa6
Osmium binding site 2 out of 4 in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Os204

b:56.8
occ:1.00
OP2 C:G105 4.0 30.5 1.0
O6 C:G106 4.3 26.4 1.0
OP1 C:U151 4.5 29.0 1.0
N7 C:G106 4.5 26.4 1.0
OP2 C:U151 4.8 29.0 1.0
OP1 C:C150 4.9 28.8 1.0

Osmium binding site 3 out of 4 in 1qa6

Go back to Osmium Binding Sites List in 1qa6
Osmium binding site 3 out of 4 in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 3 of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Os207

b:39.0
occ:1.00
OP1 D:G137 3.6 28.9 1.0
O4 D:U131 3.8 40.4 1.0
OP2 C:A117 4.2 24.1 1.0
OP2 C:U116 4.3 25.7 1.0
OP2 D:A136 4.3 22.0 1.0
O4 D:U132 4.5 29.3 1.0
O4 D:U133 4.6 31.0 1.0
C4 D:U131 4.7 40.4 1.0
C5 D:U131 4.8 40.4 1.0
O5' D:A136 4.9 22.0 1.0
OP1 C:U116 5.0 25.7 1.0

Osmium binding site 4 out of 4 in 1qa6

Go back to Osmium Binding Sites List in 1qa6
Osmium binding site 4 out of 4 in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 4 of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Os208

b:56.8
occ:1.00
OP2 D:G105 4.1 30.5 1.0
O6 D:G106 4.3 26.4 1.0
OP1 D:U151 4.5 29.0 1.0
N7 D:G106 4.5 26.4 1.0
OP2 D:U151 4.8 29.0 1.0
OP1 D:C150 4.9 28.8 1.0

Reference:

G.L.Conn, D.E.Draper, E.E.Lattman, A.G.Gittis. Crystal Structure of A Conserved Ribosomal Protein-Rna Complex. Science V. 284 1171 1999.
ISSN: ISSN 0036-8075
PubMed: 10325228
DOI: 10.1126/SCIENCE.284.5417.1171
Page generated: Wed Dec 16 02:01:16 2020

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