Osmium in PDB 1jzj: Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)

The structure of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83), PDB code: 1jzj was solved by B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.39 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	54.873, 54.873, 133.813, 90.00, 90.00, 120.00
R / Rfree (%)	22.2 / 26

The structure of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) also contains other interesting chemical elements:

Copper

(Cu)

4 atoms

The binding sites of Osmium atom in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) (pdb code 1jzj). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 4 binding sites of Osmium where determined in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83), PDB code: 1jzj:
Jump to Osmium binding site number: 1; 2; 3; 4;

Osmium binding site 1 out of 4 in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) within 5.0Å range: probe atom residue distance (Å) B Occ A:Os903 b:23.1 occ:0.50 OS A:DOS903 0.0 23.1 0.5 OS A:LOS904 1.0 20.0 0.5 N37 A:LOS904 1.3 20.2 0.5 N26 A:LOS904 1.9 20.5 0.5 ND1 A:DOS903 2.1 24.8 0.5 N13 A:DOS903 2.1 23.3 0.5 C32 A:LOS904 2.1 20.5 0.5 N2 A:DOS903 2.1 23.2 0.5 N13 A:LOS904 2.1 20.4 0.5 N37 A:DOS903 2.1 23.4 0.5 N26 A:DOS903 2.1 23.3 0.5 NE2 A:HIS83 2.1 20.3 0.5 C31 A:LOS904 2.3 20.6 0.5 NE2 A:HIS83 2.3 20.7 0.5 ND1 A:LOS904 2.4 21.2 0.5 C36 A:LOS904 2.4 20.5 0.5 C12 A:LOS904 2.6 20.4 0.5 C32 A:DOS903 2.9 23.4 0.5 C8 A:DOS903 2.9 23.3 0.5 C31 A:DOS903 2.9 23.4 0.5 C7 A:DOS903 2.9 23.3 0.5 CE1 A:DOS903 2.9 24.9 0.5 N2 A:LOS904 3.0 20.6 0.5 C12 A:DOS903 3.0 23.4 0.5 C3 A:DOS903 3.1 23.2 0.5 C27 A:DOS903 3.1 23.3 0.5 C36 A:DOS903 3.1 23.4 0.5 CE1 A:HIS83 3.1 19.3 0.5 CD2 A:HIS83 3.1 19.3 0.5 CG A:DOS903 3.1 25.0 0.5 C27 A:LOS904 3.1 20.6 0.5 C8 A:LOS904 3.2 20.6 0.5 CE1 A:HIS83 3.2 20.1 0.5 CD2 A:HIS83 3.3 20.0 0.5 CE1 A:LOS904 3.3 21.3 0.5 C33 A:LOS904 3.4 20.6 0.5 CG A:LOS904 3.5 21.6 0.5 C7 A:LOS904 3.6 20.6 0.5 C35 A:LOS904 3.6 20.4 0.5 C30 A:LOS904 3.7 20.8 0.5 C34 A:LOS904 4.0 20.6 0.5 C11 A:LOS904 4.0 20.6 0.5 C3 A:LOS904 4.0 20.6 0.5 NE2 A:DOS903 4.1 25.8 0.5 CD2 A:DOS903 4.2 26.1 0.5 ND1 A:HIS83 4.2 19.3 0.5 CG A:HIS83 4.2 19.2 0.5 C6 A:DOS903 4.3 23.3 0.5 C33 A:DOS903 4.3 23.6 0.5 C9 A:DOS903 4.3 23.4 0.5 C30 A:DOS903 4.3 23.4 0.5 C28 A:LOS904 4.3 21.0 0.5 ND1 A:HIS83 4.3 20.0 0.5 C11 A:DOS903 4.3 23.5 0.5 C4 A:DOS903 4.4 23.3 0.5 CG A:HIS83 4.4 19.8 0.5 C35 A:DOS903 4.4 23.6 0.5 C28 A:DOS903 4.4 23.4 0.5 C9 A:LOS904 4.4 20.6 0.5 C29 A:LOS904 4.5 20.9 0.5 NE2 A:LOS904 4.5 22.1 0.5 CD2 A:LOS904 4.6 22.2 0.5 C10 A:LOS904 4.7 20.7 0.5 C5 A:DOS903 4.8 23.3 0.5 C10 A:DOS903 4.8 23.5 0.5 C29 A:DOS903 4.8 23.5 0.5 C34 A:DOS903 4.8 23.6 0.5 C6 A:LOS904 5.0 20.8 0.5

Osmium binding site 2 out of 4 in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) within 5.0Å range: probe atom residue distance (Å) B Occ A:Os904 b:20.0 occ:0.50 OS A:LOS904 0.0 20.0 0.5 OS A:DOS903 1.0 23.1 0.5 N37 A:DOS903 1.3 23.4 0.5 N13 A:DOS903 2.0 23.3 0.5 NE2 A:HIS83 2.0 20.3 0.5 ND1 A:LOS904 2.1 21.2 0.5 N13 A:LOS904 2.1 20.4 0.5 N2 A:LOS904 2.1 20.6 0.5 NE2 A:HIS83 2.1 20.7 0.5 N26 A:LOS904 2.1 20.5 0.5 N37 A:LOS904 2.1 20.2 0.5 C36 A:DOS903 2.2 23.4 0.5 ND1 A:DOS903 2.4 24.8 0.5 C32 A:DOS903 2.4 23.4 0.5 N26 A:DOS903 2.5 23.3 0.5 C12 A:DOS903 2.5 23.4 0.5 CG A:LOS904 2.9 21.6 0.5 C31 A:DOS903 2.9 23.4 0.5 CE1 A:HIS83 2.9 19.3 0.5 C8 A:LOS904 2.9 20.6 0.5 C7 A:LOS904 2.9 20.6 0.5 N2 A:DOS903 2.9 23.2 0.5 C32 A:LOS904 3.0 20.5 0.5 C31 A:LOS904 3.0 20.6 0.5 CD2 A:HIS83 3.0 19.3 0.5 CD2 A:HIS83 3.0 20.0 0.5 CG A:DOS903 3.0 25.0 0.5 C3 A:LOS904 3.1 20.6 0.5 C12 A:LOS904 3.1 20.4 0.5 C27 A:LOS904 3.1 20.6 0.5 C36 A:LOS904 3.1 20.5 0.5 CE1 A:HIS83 3.1 20.1 0.5 C8 A:DOS903 3.2 23.3 0.5 CE1 A:LOS904 3.2 21.3 0.5 C35 A:DOS903 3.5 23.6 0.5 CE1 A:DOS903 3.5 24.9 0.5 C7 A:DOS903 3.5 23.3 0.5 C33 A:DOS903 3.6 23.6 0.5 C27 A:DOS903 3.7 23.3 0.5 C11 A:DOS903 3.9 23.5 0.5 ND1 A:HIS83 4.0 19.3 0.5 C3 A:DOS903 4.0 23.2 0.5 C34 A:DOS903 4.0 23.6 0.5 CG A:HIS83 4.0 19.2 0.5 CD2 A:LOS904 4.1 22.2 0.5 CG A:HIS83 4.2 19.8 0.5 ND1 A:HIS83 4.2 20.0 0.5 C6 A:LOS904 4.3 20.8 0.5 C9 A:LOS904 4.3 20.6 0.5 C30 A:DOS903 4.3 23.4 0.5 CD2 A:DOS903 4.3 26.1 0.5 NE2 A:LOS904 4.3 22.1 0.5 O A:HOH1091 4.3 19.9 1.0 C30 A:LOS904 4.3 20.8 0.5 C33 A:LOS904 4.3 20.6 0.5 C9 A:DOS903 4.4 23.4 0.5 C11 A:LOS904 4.4 20.6 0.5 C4 A:LOS904 4.4 20.8 0.5 C28 A:LOS904 4.4 21.0 0.5 C35 A:LOS904 4.4 20.4 0.5 NE2 A:DOS903 4.4 25.8 0.5 C10 A:DOS903 4.7 23.5 0.5 C5 A:LOS904 4.8 20.9 0.5 C10 A:LOS904 4.8 20.7 0.5 C28 A:DOS903 4.9 23.4 0.5 C29 A:LOS904 4.9 20.9 0.5 C34 A:LOS904 4.9 20.6 0.5 C6 A:DOS903 4.9 23.3 0.5

Osmium binding site 3 out of 4 in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 3 of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) within 5.0Å range: probe atom residue distance (Å) B Occ B:Os905 b:19.7 occ:0.50 OS B:DOS905 0.0 19.7 0.5 OS B:LOS906 0.1 19.4 0.5 N2 B:LOS906 2.0 19.3 0.5 ND1 B:LOS906 2.0 20.6 0.5 N26 B:DOS905 2.1 19.5 0.5 N26 B:LOS906 2.1 19.4 0.5 N13 B:DOS905 2.1 19.6 0.5 N2 B:DOS905 2.1 19.7 0.5 N37 B:DOS905 2.1 19.4 0.5 NE2 B:HIS283 2.1 17.6 1.0 ND1 B:DOS905 2.1 21.9 0.5 N37 B:LOS906 2.1 19.5 0.5 N13 B:LOS906 2.1 19.6 0.5 CG B:LOS906 2.9 21.3 0.5 C7 B:LOS906 2.9 19.4 0.5 C32 B:DOS905 2.9 19.4 0.5 C31 B:DOS905 2.9 19.4 0.5 C8 B:DOS905 2.9 19.7 0.5 C7 B:DOS905 2.9 19.7 0.5 C8 B:LOS906 2.9 19.7 0.5 C31 B:LOS906 2.9 19.5 0.5 C32 B:LOS906 3.0 19.5 0.5 C3 B:LOS906 3.0 19.4 0.5 CE1 B:HIS283 3.0 16.9 1.0 C27 B:LOS906 3.0 19.5 0.5 C27 B:DOS905 3.0 19.5 0.5 C3 B:DOS905 3.1 19.7 0.5 C12 B:DOS905 3.1 19.7 0.5 C36 B:DOS905 3.1 19.3 0.5 CD2 B:HIS283 3.1 16.7 1.0 C36 B:LOS906 3.1 19.5 0.5 CE1 B:DOS905 3.1 23.0 0.5 C12 B:LOS906 3.1 19.9 0.5 CG B:DOS905 3.2 23.0 0.5 CE1 B:LOS906 3.2 21.4 0.5 CD2 B:LOS906 4.1 21.7 0.5 ND1 B:HIS283 4.2 16.5 1.0 C6 B:LOS906 4.2 19.3 0.5 CG B:HIS283 4.2 16.3 1.0 C30 B:DOS905 4.3 19.5 0.5 C33 B:DOS905 4.3 19.3 0.5 C6 B:DOS905 4.3 19.8 0.5 NE2 B:LOS906 4.3 22.1 0.5 C9 B:DOS905 4.3 19.8 0.5 C30 B:LOS906 4.3 19.6 0.5 C9 B:LOS906 4.3 19.9 0.5 C4 B:LOS906 4.3 19.3 0.5 NE2 B:DOS905 4.3 24.0 0.5 C33 B:LOS906 4.3 19.6 0.5 C28 B:LOS906 4.4 19.5 0.5 C28 B:DOS905 4.4 19.7 0.5 C11 B:DOS905 4.4 19.8 0.5 C4 B:DOS905 4.4 19.9 0.5 C35 B:DOS905 4.4 19.3 0.5 CD2 B:DOS905 4.4 23.9 0.5 C35 B:LOS906 4.4 19.6 0.5 C11 B:LOS906 4.4 20.0 0.5 C5 B:LOS906 4.8 19.3 0.5 O B:HOH1039 4.8 34.0 1.0 C29 B:DOS905 4.8 19.6 0.5 C29 B:LOS906 4.8 19.5 0.5 C5 B:DOS905 4.8 19.9 0.5 C10 B:DOS905 4.8 19.8 0.5 C34 B:DOS905 4.9 19.3 0.5 O B:HOH1134 4.9 35.7 1.0 C34 B:LOS906 4.9 19.6 0.5 C10 B:LOS906 4.9 20.1 0.5

Osmium binding site 4 out of 4 in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 4 of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) within 5.0Å range: probe atom residue distance (Å) B Occ B:Os906 b:19.4 occ:0.50 OS B:LOS906 0.0 19.4 0.5 OS B:DOS905 0.1 19.7 0.5 N2 B:DOS905 2.0 19.7 0.5 ND1 B:DOS905 2.0 21.9 0.5 N13 B:LOS906 2.1 19.6 0.5 N37 B:LOS906 2.1 19.5 0.5 NE2 B:HIS283 2.1 17.6 1.0 N2 B:LOS906 2.1 19.3 0.5 N26 B:LOS906 2.1 19.4 0.5 N13 B:DOS905 2.1 19.6 0.5 ND1 B:LOS906 2.1 20.6 0.5 N37 B:DOS905 2.1 19.4 0.5 N26 B:DOS905 2.2 19.5 0.5 C7 B:DOS905 2.9 19.7 0.5 C8 B:DOS905 2.9 19.7 0.5 C8 B:LOS906 2.9 19.7 0.5 C32 B:LOS906 2.9 19.5 0.5 C7 B:LOS906 2.9 19.4 0.5 C31 B:LOS906 2.9 19.5 0.5 CG B:LOS906 2.9 21.3 0.5 CE1 B:HIS283 3.0 16.9 1.0 C3 B:DOS905 3.0 19.7 0.5 C32 B:DOS905 3.0 19.4 0.5 C31 B:DOS905 3.0 19.4 0.5 CE1 B:DOS905 3.1 23.0 0.5 C12 B:LOS906 3.1 19.9 0.5 C36 B:LOS906 3.1 19.5 0.5 C27 B:LOS906 3.1 19.5 0.5 C3 B:LOS906 3.1 19.4 0.5 C12 B:DOS905 3.1 19.7 0.5 C27 B:DOS905 3.1 19.5 0.5 CD2 B:HIS283 3.1 16.7 1.0 C36 B:DOS905 3.1 19.3 0.5 CG B:DOS905 3.1 23.0 0.5 CE1 B:LOS906 3.3 21.4 0.5 ND1 B:HIS283 4.1 16.5 1.0 CD2 B:LOS906 4.2 21.7 0.5 NE2 B:DOS905 4.2 24.0 0.5 C6 B:DOS905 4.2 19.8 0.5 CG B:HIS283 4.2 16.3 1.0 C6 B:LOS906 4.3 19.3 0.5 C9 B:LOS906 4.3 19.9 0.5 C9 B:DOS905 4.3 19.8 0.5 C33 B:LOS906 4.3 19.6 0.5 C30 B:LOS906 4.3 19.6 0.5 C4 B:DOS905 4.3 19.9 0.5 CD2 B:DOS905 4.3 23.9 0.5 NE2 B:LOS906 4.3 22.1 0.5 C11 B:LOS906 4.4 20.0 0.5 C35 B:LOS906 4.4 19.6 0.5 C33 B:DOS905 4.4 19.3 0.5 C30 B:DOS905 4.4 19.5 0.5 C28 B:LOS906 4.4 19.5 0.5 C4 B:LOS906 4.4 19.3 0.5 C11 B:DOS905 4.4 19.8 0.5 C28 B:DOS905 4.4 19.7 0.5 C35 B:DOS905 4.4 19.3 0.5 C5 B:DOS905 4.8 19.9 0.5 O B:HOH1039 4.8 34.0 1.0 C5 B:LOS906 4.8 19.3 0.5 C34 B:LOS906 4.8 19.6 0.5 C10 B:LOS906 4.8 20.1 0.5 C29 B:LOS906 4.8 19.5 0.5 C10 B:DOS905 4.9 19.8 0.5 O B:HOH1000 4.9 26.1 1.0 C29 B:DOS905 4.9 19.6 0.5 C34 B:DOS905 4.9 19.3 0.5 O B:HOH1134 4.9 35.7 1.0

B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray. Electron Tunneling in Single Crystals of Pseudomonas Aeruginosa Azurins. J.Am.Chem.Soc. V. 123 11623 2001.
ISSN: ISSN 0002-7863
PubMed: 11716717
DOI: 10.1021/JA0115870