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Osmium in PDB 1jzj: Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)

Protein crystallography data

The structure of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83), PDB code: 1jzj was solved by B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.39 / 1.80
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 54.873, 54.873, 133.813, 90.00, 90.00, 120.00
R / Rfree (%) 22.2 / 26

Other elements in 1jzj:

The structure of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Osmium Binding Sites:

The binding sites of Osmium atom in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) (pdb code 1jzj). This binding sites where shown within 5.0 Angstroms radius around Osmium atom.
In total 4 binding sites of Osmium where determined in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83), PDB code: 1jzj:
Jump to Osmium binding site number: 1; 2; 3; 4;

Osmium binding site 1 out of 4 in 1jzj

Go back to Osmium Binding Sites List in 1jzj
Osmium binding site 1 out of 4 in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 1 of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os903

b:23.1
occ:0.50
OS A:DOS903 0.0 23.1 0.5
OS A:LOS904 1.0 20.0 0.5
N37 A:LOS904 1.3 20.2 0.5
N26 A:LOS904 1.9 20.5 0.5
ND1 A:DOS903 2.1 24.8 0.5
N13 A:DOS903 2.1 23.3 0.5
C32 A:LOS904 2.1 20.5 0.5
N2 A:DOS903 2.1 23.2 0.5
N13 A:LOS904 2.1 20.4 0.5
N37 A:DOS903 2.1 23.4 0.5
N26 A:DOS903 2.1 23.3 0.5
NE2 A:HIS83 2.1 20.3 0.5
C31 A:LOS904 2.3 20.6 0.5
NE2 A:HIS83 2.3 20.7 0.5
ND1 A:LOS904 2.4 21.2 0.5
C36 A:LOS904 2.4 20.5 0.5
C12 A:LOS904 2.6 20.4 0.5
C32 A:DOS903 2.9 23.4 0.5
C8 A:DOS903 2.9 23.3 0.5
C31 A:DOS903 2.9 23.4 0.5
C7 A:DOS903 2.9 23.3 0.5
CE1 A:DOS903 2.9 24.9 0.5
N2 A:LOS904 3.0 20.6 0.5
C12 A:DOS903 3.0 23.4 0.5
C3 A:DOS903 3.1 23.2 0.5
C27 A:DOS903 3.1 23.3 0.5
C36 A:DOS903 3.1 23.4 0.5
CE1 A:HIS83 3.1 19.3 0.5
CD2 A:HIS83 3.1 19.3 0.5
CG A:DOS903 3.1 25.0 0.5
C27 A:LOS904 3.1 20.6 0.5
C8 A:LOS904 3.2 20.6 0.5
CE1 A:HIS83 3.2 20.1 0.5
CD2 A:HIS83 3.3 20.0 0.5
CE1 A:LOS904 3.3 21.3 0.5
C33 A:LOS904 3.4 20.6 0.5
CG A:LOS904 3.5 21.6 0.5
C7 A:LOS904 3.6 20.6 0.5
C35 A:LOS904 3.6 20.4 0.5
C30 A:LOS904 3.7 20.8 0.5
C34 A:LOS904 4.0 20.6 0.5
C11 A:LOS904 4.0 20.6 0.5
C3 A:LOS904 4.0 20.6 0.5
NE2 A:DOS903 4.1 25.8 0.5
CD2 A:DOS903 4.2 26.1 0.5
ND1 A:HIS83 4.2 19.3 0.5
CG A:HIS83 4.2 19.2 0.5
C6 A:DOS903 4.3 23.3 0.5
C33 A:DOS903 4.3 23.6 0.5
C9 A:DOS903 4.3 23.4 0.5
C30 A:DOS903 4.3 23.4 0.5
C28 A:LOS904 4.3 21.0 0.5
ND1 A:HIS83 4.3 20.0 0.5
C11 A:DOS903 4.3 23.5 0.5
C4 A:DOS903 4.4 23.3 0.5
CG A:HIS83 4.4 19.8 0.5
C35 A:DOS903 4.4 23.6 0.5
C28 A:DOS903 4.4 23.4 0.5
C9 A:LOS904 4.4 20.6 0.5
C29 A:LOS904 4.5 20.9 0.5
NE2 A:LOS904 4.5 22.1 0.5
CD2 A:LOS904 4.6 22.2 0.5
C10 A:LOS904 4.7 20.7 0.5
C5 A:DOS903 4.8 23.3 0.5
C10 A:DOS903 4.8 23.5 0.5
C29 A:DOS903 4.8 23.5 0.5
C34 A:DOS903 4.8 23.6 0.5
C6 A:LOS904 5.0 20.8 0.5

Osmium binding site 2 out of 4 in 1jzj

Go back to Osmium Binding Sites List in 1jzj
Osmium binding site 2 out of 4 in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 2 of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Os904

b:20.0
occ:0.50
OS A:LOS904 0.0 20.0 0.5
OS A:DOS903 1.0 23.1 0.5
N37 A:DOS903 1.3 23.4 0.5
N13 A:DOS903 2.0 23.3 0.5
NE2 A:HIS83 2.0 20.3 0.5
ND1 A:LOS904 2.1 21.2 0.5
N13 A:LOS904 2.1 20.4 0.5
N2 A:LOS904 2.1 20.6 0.5
NE2 A:HIS83 2.1 20.7 0.5
N26 A:LOS904 2.1 20.5 0.5
N37 A:LOS904 2.1 20.2 0.5
C36 A:DOS903 2.2 23.4 0.5
ND1 A:DOS903 2.4 24.8 0.5
C32 A:DOS903 2.4 23.4 0.5
N26 A:DOS903 2.5 23.3 0.5
C12 A:DOS903 2.5 23.4 0.5
CG A:LOS904 2.9 21.6 0.5
C31 A:DOS903 2.9 23.4 0.5
CE1 A:HIS83 2.9 19.3 0.5
C8 A:LOS904 2.9 20.6 0.5
C7 A:LOS904 2.9 20.6 0.5
N2 A:DOS903 2.9 23.2 0.5
C32 A:LOS904 3.0 20.5 0.5
C31 A:LOS904 3.0 20.6 0.5
CD2 A:HIS83 3.0 19.3 0.5
CD2 A:HIS83 3.0 20.0 0.5
CG A:DOS903 3.0 25.0 0.5
C3 A:LOS904 3.1 20.6 0.5
C12 A:LOS904 3.1 20.4 0.5
C27 A:LOS904 3.1 20.6 0.5
C36 A:LOS904 3.1 20.5 0.5
CE1 A:HIS83 3.1 20.1 0.5
C8 A:DOS903 3.2 23.3 0.5
CE1 A:LOS904 3.2 21.3 0.5
C35 A:DOS903 3.5 23.6 0.5
CE1 A:DOS903 3.5 24.9 0.5
C7 A:DOS903 3.5 23.3 0.5
C33 A:DOS903 3.6 23.6 0.5
C27 A:DOS903 3.7 23.3 0.5
C11 A:DOS903 3.9 23.5 0.5
ND1 A:HIS83 4.0 19.3 0.5
C3 A:DOS903 4.0 23.2 0.5
C34 A:DOS903 4.0 23.6 0.5
CG A:HIS83 4.0 19.2 0.5
CD2 A:LOS904 4.1 22.2 0.5
CG A:HIS83 4.2 19.8 0.5
ND1 A:HIS83 4.2 20.0 0.5
C6 A:LOS904 4.3 20.8 0.5
C9 A:LOS904 4.3 20.6 0.5
C30 A:DOS903 4.3 23.4 0.5
CD2 A:DOS903 4.3 26.1 0.5
NE2 A:LOS904 4.3 22.1 0.5
O A:HOH1091 4.3 19.9 1.0
C30 A:LOS904 4.3 20.8 0.5
C33 A:LOS904 4.3 20.6 0.5
C9 A:DOS903 4.4 23.4 0.5
C11 A:LOS904 4.4 20.6 0.5
C4 A:LOS904 4.4 20.8 0.5
C28 A:LOS904 4.4 21.0 0.5
C35 A:LOS904 4.4 20.4 0.5
NE2 A:DOS903 4.4 25.8 0.5
C10 A:DOS903 4.7 23.5 0.5
C5 A:LOS904 4.8 20.9 0.5
C10 A:LOS904 4.8 20.7 0.5
C28 A:DOS903 4.9 23.4 0.5
C29 A:LOS904 4.9 20.9 0.5
C34 A:LOS904 4.9 20.6 0.5
C6 A:DOS903 4.9 23.3 0.5

Osmium binding site 3 out of 4 in 1jzj

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Osmium binding site 3 out of 4 in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 3 of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os905

b:19.7
occ:0.50
OS B:DOS905 0.0 19.7 0.5
OS B:LOS906 0.1 19.4 0.5
N2 B:LOS906 2.0 19.3 0.5
ND1 B:LOS906 2.0 20.6 0.5
N26 B:DOS905 2.1 19.5 0.5
N26 B:LOS906 2.1 19.4 0.5
N13 B:DOS905 2.1 19.6 0.5
N2 B:DOS905 2.1 19.7 0.5
N37 B:DOS905 2.1 19.4 0.5
NE2 B:HIS283 2.1 17.6 1.0
ND1 B:DOS905 2.1 21.9 0.5
N37 B:LOS906 2.1 19.5 0.5
N13 B:LOS906 2.1 19.6 0.5
CG B:LOS906 2.9 21.3 0.5
C7 B:LOS906 2.9 19.4 0.5
C32 B:DOS905 2.9 19.4 0.5
C31 B:DOS905 2.9 19.4 0.5
C8 B:DOS905 2.9 19.7 0.5
C7 B:DOS905 2.9 19.7 0.5
C8 B:LOS906 2.9 19.7 0.5
C31 B:LOS906 2.9 19.5 0.5
C32 B:LOS906 3.0 19.5 0.5
C3 B:LOS906 3.0 19.4 0.5
CE1 B:HIS283 3.0 16.9 1.0
C27 B:LOS906 3.0 19.5 0.5
C27 B:DOS905 3.0 19.5 0.5
C3 B:DOS905 3.1 19.7 0.5
C12 B:DOS905 3.1 19.7 0.5
C36 B:DOS905 3.1 19.3 0.5
CD2 B:HIS283 3.1 16.7 1.0
C36 B:LOS906 3.1 19.5 0.5
CE1 B:DOS905 3.1 23.0 0.5
C12 B:LOS906 3.1 19.9 0.5
CG B:DOS905 3.2 23.0 0.5
CE1 B:LOS906 3.2 21.4 0.5
CD2 B:LOS906 4.1 21.7 0.5
ND1 B:HIS283 4.2 16.5 1.0
C6 B:LOS906 4.2 19.3 0.5
CG B:HIS283 4.2 16.3 1.0
C30 B:DOS905 4.3 19.5 0.5
C33 B:DOS905 4.3 19.3 0.5
C6 B:DOS905 4.3 19.8 0.5
NE2 B:LOS906 4.3 22.1 0.5
C9 B:DOS905 4.3 19.8 0.5
C30 B:LOS906 4.3 19.6 0.5
C9 B:LOS906 4.3 19.9 0.5
C4 B:LOS906 4.3 19.3 0.5
NE2 B:DOS905 4.3 24.0 0.5
C33 B:LOS906 4.3 19.6 0.5
C28 B:LOS906 4.4 19.5 0.5
C28 B:DOS905 4.4 19.7 0.5
C11 B:DOS905 4.4 19.8 0.5
C4 B:DOS905 4.4 19.9 0.5
C35 B:DOS905 4.4 19.3 0.5
CD2 B:DOS905 4.4 23.9 0.5
C35 B:LOS906 4.4 19.6 0.5
C11 B:LOS906 4.4 20.0 0.5
C5 B:LOS906 4.8 19.3 0.5
O B:HOH1039 4.8 34.0 1.0
C29 B:DOS905 4.8 19.6 0.5
C29 B:LOS906 4.8 19.5 0.5
C5 B:DOS905 4.8 19.9 0.5
C10 B:DOS905 4.8 19.8 0.5
C34 B:DOS905 4.9 19.3 0.5
O B:HOH1134 4.9 35.7 1.0
C34 B:LOS906 4.9 19.6 0.5
C10 B:LOS906 4.9 20.1 0.5

Osmium binding site 4 out of 4 in 1jzj

Go back to Osmium Binding Sites List in 1jzj
Osmium binding site 4 out of 4 in the Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Osmium with other atoms in the Os binding site number 4 of Pseudomonas Aeruginosa Azurin Os(Bpy)2(Im)(HIS83) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Os906

b:19.4
occ:0.50
OS B:LOS906 0.0 19.4 0.5
OS B:DOS905 0.1 19.7 0.5
N2 B:DOS905 2.0 19.7 0.5
ND1 B:DOS905 2.0 21.9 0.5
N13 B:LOS906 2.1 19.6 0.5
N37 B:LOS906 2.1 19.5 0.5
NE2 B:HIS283 2.1 17.6 1.0
N2 B:LOS906 2.1 19.3 0.5
N26 B:LOS906 2.1 19.4 0.5
N13 B:DOS905 2.1 19.6 0.5
ND1 B:LOS906 2.1 20.6 0.5
N37 B:DOS905 2.1 19.4 0.5
N26 B:DOS905 2.2 19.5 0.5
C7 B:DOS905 2.9 19.7 0.5
C8 B:DOS905 2.9 19.7 0.5
C8 B:LOS906 2.9 19.7 0.5
C32 B:LOS906 2.9 19.5 0.5
C7 B:LOS906 2.9 19.4 0.5
C31 B:LOS906 2.9 19.5 0.5
CG B:LOS906 2.9 21.3 0.5
CE1 B:HIS283 3.0 16.9 1.0
C3 B:DOS905 3.0 19.7 0.5
C32 B:DOS905 3.0 19.4 0.5
C31 B:DOS905 3.0 19.4 0.5
CE1 B:DOS905 3.1 23.0 0.5
C12 B:LOS906 3.1 19.9 0.5
C36 B:LOS906 3.1 19.5 0.5
C27 B:LOS906 3.1 19.5 0.5
C3 B:LOS906 3.1 19.4 0.5
C12 B:DOS905 3.1 19.7 0.5
C27 B:DOS905 3.1 19.5 0.5
CD2 B:HIS283 3.1 16.7 1.0
C36 B:DOS905 3.1 19.3 0.5
CG B:DOS905 3.1 23.0 0.5
CE1 B:LOS906 3.3 21.4 0.5
ND1 B:HIS283 4.1 16.5 1.0
CD2 B:LOS906 4.2 21.7 0.5
NE2 B:DOS905 4.2 24.0 0.5
C6 B:DOS905 4.2 19.8 0.5
CG B:HIS283 4.2 16.3 1.0
C6 B:LOS906 4.3 19.3 0.5
C9 B:LOS906 4.3 19.9 0.5
C9 B:DOS905 4.3 19.8 0.5
C33 B:LOS906 4.3 19.6 0.5
C30 B:LOS906 4.3 19.6 0.5
C4 B:DOS905 4.3 19.9 0.5
CD2 B:DOS905 4.3 23.9 0.5
NE2 B:LOS906 4.3 22.1 0.5
C11 B:LOS906 4.4 20.0 0.5
C35 B:LOS906 4.4 19.6 0.5
C33 B:DOS905 4.4 19.3 0.5
C30 B:DOS905 4.4 19.5 0.5
C28 B:LOS906 4.4 19.5 0.5
C4 B:LOS906 4.4 19.3 0.5
C11 B:DOS905 4.4 19.8 0.5
C28 B:DOS905 4.4 19.7 0.5
C35 B:DOS905 4.4 19.3 0.5
C5 B:DOS905 4.8 19.9 0.5
O B:HOH1039 4.8 34.0 1.0
C5 B:LOS906 4.8 19.3 0.5
C34 B:LOS906 4.8 19.6 0.5
C10 B:LOS906 4.8 20.1 0.5
C29 B:LOS906 4.8 19.5 0.5
C10 B:DOS905 4.9 19.8 0.5
O B:HOH1000 4.9 26.1 1.0
C29 B:DOS905 4.9 19.6 0.5
C34 B:DOS905 4.9 19.3 0.5
O B:HOH1134 4.9 35.7 1.0

Reference:

B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray. Electron Tunneling in Single Crystals of Pseudomonas Aeruginosa Azurins. J.Am.Chem.Soc. V. 123 11623 2001.
ISSN: ISSN 0002-7863
PubMed: 11716717
DOI: 10.1021/JA0115870
Page generated: Wed Dec 16 02:01:15 2020

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